I prepared a client’s return as a Form 1120. When I e-filed it, the return was rejected because the IRS records show the corporation has an active S election. Neither the client nor I was aware of the S election.
I called the IRS Business & Specialty Tax Line, and the representative advised me to fax a revocation of the S election, which I did using the fax number they provided. While waiting for the IRS to process the revocation, I filed an extension.
Here’s my concern:
If the revocation is accepted as effective for the tax year, the corporation will owe approximately $10,000 with the Form 1120.
If the revocation is not effective for the tax year, then the corporation would need to file Form 1120-S instead, which would affect the shareholder’s Form 1040 (including reasonable compensation/payroll considerations).
To minimize potential interest and penalties, would you recommend making the $10,000 payment now under the corporation’s EIN while waiting for the IRS to process the revocation? If so, what is the best way to designate the payment so it is properly applied if the revocation is approved? And if the revocation is ultimately not effective for the year, would that payment simply be treated as an overpayment/refund?
Has anyone dealt with this situation before, and is there a better approach?